Influenza A virus subtypes in wild birds in North-Eastern Spain (Catalonia).
Identifieur interne : 000478 ( Main/Exploration ); précédent : 000477; suivant : 000479Influenza A virus subtypes in wild birds in North-Eastern Spain (Catalonia).
Auteurs : Núria Busquets [Espagne] ; Anna Alba ; Sebastián Napp ; Azucena Sánchez ; Erika Serrano ; Raquel Rivas ; José I. Nú Ez ; Natàlia MajSource :
- Virus research [ 1872-7492 ] ; 2010.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Alignement de séquences (MeSH), Analyse de regroupements (MeSH), Analyse de séquence d'ADN (MeSH), Animaux (MeSH), Données de séquences moléculaires (MeSH), Embryon de poulet (MeSH), Espagne (épidémiologie), Grippe chez les oiseaux (virologie), Grippe chez les oiseaux (épidémiologie), Hémagglutinines virales (immunologie), Maladies des oiseaux (virologie), Maladies des oiseaux (épidémiologie), Oiseaux (MeSH), Phylogenèse (MeSH), Protéines virales (immunologie), RT-PCR (MeSH), Sialidase (immunologie), Sérotypie (MeSH), Tests d'inhibition de l'hémagglutination (MeSH), Virus de la grippe A (classification), Virus de la grippe A (croissance et développement), Virus de la grippe A (génétique), Virus de la grippe A (isolement et purification), Épidémiologie moléculaire (MeSH).
- MESH :
- croissance et développement : Virus de la grippe A.
- génétique : ARN viral, Virus de la grippe A.
- immunologie : Hémagglutinines virales, Protéines virales, Sialidase.
- isolement et purification : Virus de la grippe A.
- virologie : Grippe chez les oiseaux, Maladies des oiseaux.
- épidémiologie : Espagne, Grippe chez les oiseaux, Maladies des oiseaux.
- Alignement de séquences, Analyse de regroupements, Analyse de séquence d'ADN, Animaux, Données de séquences moléculaires, Embryon de poulet, Oiseaux, Phylogenèse, RT-PCR, Sérotypie, Tests d'inhibition de l'hémagglutination, Épidémiologie moléculaire.
- Wicri :
- geographic : Espagne.
English descriptors
- KwdEn :
- Animals (MeSH), Bird Diseases (epidemiology), Bird Diseases (virology), Birds (MeSH), Chick Embryo (MeSH), Cluster Analysis (MeSH), Hemagglutination Inhibition Tests (MeSH), Hemagglutinins, Viral (immunology), Influenza A virus (classification), Influenza A virus (genetics), Influenza A virus (growth & development), Influenza A virus (isolation & purification), Influenza in Birds (epidemiology), Influenza in Birds (virology), Molecular Epidemiology (MeSH), Molecular Sequence Data (MeSH), Neuraminidase (immunology), Phylogeny (MeSH), RNA, Viral (genetics), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Sequence Alignment (MeSH), Sequence Analysis, DNA (MeSH), Serotyping (MeSH), Spain (epidemiology), Viral Proteins (immunology).
- MESH :
- chemical , genetics : RNA, Viral.
- chemical , immunology : Hemagglutinins, Viral, Neuraminidase, Viral Proteins.
- geographic , epidemiology : Spain.
- classification : Influenza A virus.
- epidemiology : Bird Diseases, Influenza in Birds.
- genetics : Influenza A virus.
- growth & development : Influenza A virus.
- isolation & purification : Influenza A virus.
- virology : Bird Diseases, Influenza in Birds.
- Animals, Birds, Chick Embryo, Cluster Analysis, Hemagglutination Inhibition Tests, Molecular Epidemiology, Molecular Sequence Data, Phylogeny, Reverse Transcriptase Polymerase Chain Reaction, Sequence Alignment, Sequence Analysis, DNA, Serotyping.
Abstract
Since the spread of H5N1 highly pathogenic avian influenza virus in 2005, many surveillance programmes have been initiated in poultry and wild birds worldwide. This study describes for the first time the detection of different subtypes of avian influenza viruses (AIV) in wild birds in the West Mediterranean area (Catalonia, North-Eastern Spain). During a 3-year period (from mid-2006 to mid-2009), 1374 birds from 16 different families were examined, and a total of 62 AIV were detected by means of a real-time reverse transcriptase PCR assay. AIV were more frequently detected in Anatidae, Phoenicopteridae, Rallidae and Laridae families. Of the 62 positive samples, 28 AIV could be isolated in embryonated eggs. All isolates were subtyped by haemagglutinin and neuraminidase inhibition techniques and 10 different haemagglutinins (HA) and 7 neuraminidases (NA) were found in 13 different subtype combinations. The most common combinations were H4N6 (22.2%) and H1N1 (18.5%). The HA and NA gene sequences of different AIV subtypes were compared and aligned with those available AIV strains from genome databases. Our studies on AIV phylogenetic analysis revealed that all AIV genes sequenced from wild birds in North-Eastern Spain clustered within Eurasian avian clades, including the sequences of H8, N4 and N5 genes analyzed for the first time in Europe. The results contribute to the understanding of AIV in the Mediterranean area and in Europe.
DOI: 10.1016/j.virusres.2009.12.005
PubMed: 20045439
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Nú Ez</name></author><author><name sortKey="Maj, Natalia" sort="Maj, Natalia" uniqKey="Maj N" first="Natàlia" last="Maj">Natàlia Maj</name></author></analytic><series><title level="j">Virus research</title><idno type="eISSN">1872-7492</idno><imprint><date when="2010" type="published">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term><term>Bird Diseases (epidemiology)</term><term>Bird Diseases (virology)</term><term>Birds (MeSH)</term><term>Chick Embryo (MeSH)</term><term>Cluster Analysis (MeSH)</term><term>Hemagglutination Inhibition Tests (MeSH)</term><term>Hemagglutinins, Viral (immunology)</term><term>Influenza A virus (classification)</term><term>Influenza A virus (genetics)</term><term>Influenza A virus (growth & development)</term><term>Influenza A virus (isolation & purification)</term><term>Influenza in Birds (epidemiology)</term><term>Influenza in Birds (virology)</term><term>Molecular Epidemiology (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Neuraminidase (immunology)</term><term>Phylogeny (MeSH)</term><term>RNA, Viral (genetics)</term><term>Reverse Transcriptase Polymerase Chain Reaction (MeSH)</term><term>Sequence Alignment (MeSH)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Serotyping (MeSH)</term><term>Spain (epidemiology)</term><term>Viral Proteins (immunology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term><term>Alignement de séquences (MeSH)</term><term>Analyse de regroupements (MeSH)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Animaux (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Embryon de poulet (MeSH)</term><term>Espagne (épidémiologie)</term><term>Grippe chez les oiseaux (virologie)</term><term>Grippe chez les oiseaux (épidémiologie)</term><term>Hémagglutinines virales (immunologie)</term><term>Maladies des oiseaux (virologie)</term><term>Maladies des oiseaux (épidémiologie)</term><term>Oiseaux (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Protéines virales (immunologie)</term><term>RT-PCR (MeSH)</term><term>Sialidase (immunologie)</term><term>Sérotypie (MeSH)</term><term>Tests d'inhibition de l'hémagglutination (MeSH)</term><term>Virus de la grippe A (classification)</term><term>Virus de la grippe A (croissance et développement)</term><term>Virus de la grippe A (génétique)</term><term>Virus de la grippe A (isolement et purification)</term><term>Épidémiologie moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" type="chemical" qualifier="immunology" xml:lang="en"><term>Hemagglutinins, Viral</term><term>Neuraminidase</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Spain</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Bird Diseases</term><term>Influenza in Birds</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term><term>Virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Hémagglutinines virales</term><term>Protéines virales</term><term>Sialidase</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Grippe chez les oiseaux</term><term>Maladies des oiseaux</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Bird Diseases</term><term>Influenza in Birds</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Espagne</term><term>Grippe chez les oiseaux</term><term>Maladies des oiseaux</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Birds</term><term>Chick Embryo</term><term>Cluster Analysis</term><term>Hemagglutination Inhibition Tests</term><term>Molecular Epidemiology</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Sequence Alignment</term><term>Sequence Analysis, DNA</term><term>Serotyping</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term><term>Analyse de regroupements</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Données de séquences moléculaires</term><term>Embryon de poulet</term><term>Oiseaux</term><term>Phylogenèse</term><term>RT-PCR</term><term>Sérotypie</term><term>Tests d'inhibition de l'hémagglutination</term><term>Épidémiologie moléculaire</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Espagne</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Since the spread of H5N1 highly pathogenic avian influenza virus in 2005, many surveillance programmes have been initiated in poultry and wild birds worldwide. This study describes for the first time the detection of different subtypes of avian influenza viruses (AIV) in wild birds in the West Mediterranean area (Catalonia, North-Eastern Spain). During a 3-year period (from mid-2006 to mid-2009), 1374 birds from 16 different families were examined, and a total of 62 AIV were detected by means of a real-time reverse transcriptase PCR assay. AIV were more frequently detected in Anatidae, Phoenicopteridae, Rallidae and Laridae families. Of the 62 positive samples, 28 AIV could be isolated in embryonated eggs. All isolates were subtyped by haemagglutinin and neuraminidase inhibition techniques and 10 different haemagglutinins (HA) and 7 neuraminidases (NA) were found in 13 different subtype combinations. The most common combinations were H4N6 (22.2%) and H1N1 (18.5%). The HA and NA gene sequences of different AIV subtypes were compared and aligned with those available AIV strains from genome databases. Our studies on AIV phylogenetic analysis revealed that all AIV genes sequenced from wild birds in North-Eastern Spain clustered within Eurasian avian clades, including the sequences of H8, N4 and N5 genes analyzed for the first time in Europe. The results contribute to the understanding of AIV in the Mediterranean area and in Europe.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20045439</PMID><DateCompleted><Year>2010</Year><Month>05</Month><Day>19</Day></DateCompleted><DateRevised><Year>2010</Year><Month>03</Month><Day>08</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1872-7492</ISSN><JournalIssue CitedMedium="Internet"><Volume>149</Volume><Issue>1</Issue><PubDate><Year>2010</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Virus research</Title><ISOAbbreviation>Virus Res.</ISOAbbreviation></Journal><ArticleTitle>Influenza A virus subtypes in wild birds in North-Eastern Spain (Catalonia).</ArticleTitle><Pagination><MedlinePgn>10-8</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.virusres.2009.12.005</ELocationID><Abstract><AbstractText>Since the spread of H5N1 highly pathogenic avian influenza virus in 2005, many surveillance programmes have been initiated in poultry and wild birds worldwide. This study describes for the first time the detection of different subtypes of avian influenza viruses (AIV) in wild birds in the West Mediterranean area (Catalonia, North-Eastern Spain). During a 3-year period (from mid-2006 to mid-2009), 1374 birds from 16 different families were examined, and a total of 62 AIV were detected by means of a real-time reverse transcriptase PCR assay. AIV were more frequently detected in Anatidae, Phoenicopteridae, Rallidae and Laridae families. Of the 62 positive samples, 28 AIV could be isolated in embryonated eggs. All isolates were subtyped by haemagglutinin and neuraminidase inhibition techniques and 10 different haemagglutinins (HA) and 7 neuraminidases (NA) were found in 13 different subtype combinations. The most common combinations were H4N6 (22.2%) and H1N1 (18.5%). The HA and NA gene sequences of different AIV subtypes were compared and aligned with those available AIV strains from genome databases. Our studies on AIV phylogenetic analysis revealed that all AIV genes sequenced from wild birds in North-Eastern Spain clustered within Eurasian avian clades, including the sequences of H8, N4 and N5 genes analyzed for the first time in Europe. The results contribute to the understanding of AIV in the Mediterranean area and in Europe.</AbstractText><CopyrightInformation>Copyright 2009 Elsevier B.V. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Busquets</LastName><ForeName>Núria</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain. nuria.busquets@cresa.uab.es</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Alba</LastName><ForeName>Anna</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Napp</LastName><ForeName>Sebastián</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Sánchez</LastName><ForeName>Azucena</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Serrano</LastName><ForeName>Erika</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Rivas</LastName><ForeName>Raquel</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Núñez</LastName><ForeName>José I</ForeName><Initials>JI</Initials></Author><Author ValidYN="Y"><LastName>Majó</LastName><ForeName>Natàlia</ForeName><Initials>N</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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MajorTopicYN="N">Hemagglutination Inhibition Tests</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006389" MajorTopicYN="N">Hemagglutinins, Viral</DescriptorName><QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017720" MajorTopicYN="N">Molecular 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MajorTopicYN="N">Serotyping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013030" MajorTopicYN="N" Type="Geographic">Spain</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014764" MajorTopicYN="N">Viral Proteins</DescriptorName><QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2009</Year><Month>10</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2009</Year><Month>12</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2009</Year><Month>12</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2010</Year><Month>1</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2010</Year><Month>1</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2010</Year><Month>5</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">20045439</ArticleId><ArticleId IdType="pii">S0168-1702(09)00452-3</ArticleId><ArticleId IdType="doi">10.1016/j.virusres.2009.12.005</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Espagne</li></country><region><li>Catalogne</li></region><settlement><li>Barcelone</li></settlement><orgName><li>Université autonome de Barcelone</li></orgName></list><tree><noCountry><name sortKey="Alba, Anna" sort="Alba, Anna" uniqKey="Alba A" first="Anna" last="Alba">Anna Alba</name><name sortKey="Maj, Natalia" sort="Maj, Natalia" uniqKey="Maj N" first="Natàlia" last="Maj">Natàlia Maj</name><name sortKey="Napp, Sebastian" sort="Napp, Sebastian" uniqKey="Napp S" first="Sebastián" last="Napp">Sebastián Napp</name><name sortKey="Nu Ez, Jose I" sort="Nu Ez, Jose I" uniqKey="Nu Ez J" first="José I" last="Nú Ez">José I. Nú Ez</name><name sortKey="Rivas, Raquel" sort="Rivas, Raquel" uniqKey="Rivas R" first="Raquel" last="Rivas">Raquel Rivas</name><name sortKey="Sanchez, Azucena" sort="Sanchez, Azucena" uniqKey="Sanchez A" first="Azucena" last="Sánchez">Azucena Sánchez</name><name sortKey="Serrano, Erika" sort="Serrano, Erika" uniqKey="Serrano E" first="Erika" last="Serrano">Erika Serrano</name></noCountry><country name="Espagne"><region name="Catalogne"><name sortKey="Busquets, Nuria" sort="Busquets, Nuria" uniqKey="Busquets N" first="Núria" last="Busquets">Núria Busquets</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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